bedhost is a Python FastAPI module for the API that powers BEDbase.
It needs a path to the bedbase configuration file, which can be provided either via -c/--config argument or read from $BEDBASE_CONFIG environment variable.
- Deployed public instance: https://bedbase.org/
- Documentation: https://docs.bedbase.org/bedhost
- API: https://api.bedbase.org/
- DEV API: https://api-dev.bedbase.org/
- UI: https://bedbase.org/
- DEV UI: https://dev.bedbase.org/
- Source Code: https://github.com/databio/bedhost/
source environment/production.env
BEDBASE_CONFIG=deployment/config/api.bedbase.org.yaml uvicorn bedhost.main:app --reload
UI development:
export VITE_API_HOST=http://localhost:8000
Black-box compliance tests (against any deployment):
pytest tests/api/ --api_root=https://api.bedbase.org
Integration tests (ephemeral Postgres + Qdrant + in-process TestClient, ~30s):
./tests/scripts/test-integration.sh
Manual service control:
./tests/scripts/services.sh start
RUN_INTEGRATION_TESTS=true pytest tests/integration/ tests/api/
./tests/scripts/services.sh stop
Integration tests require network access on first boot (bbconf downloads a
licenses CSV from GitHub and may pull HuggingFace models unless
BEDHOST_INIT_ML=false is set; test-integration.sh sets it).
BEDHOST_LOG_LEVEL (default INFO) sets the log level for bedhost, bbconf, and geniml.