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GeezerVison is showing github.com — FHCRC Computational Biology

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  1. seqmagick seqmagick Public

    An imagemagick-like frontend to Biopython SeqIO

    Python 121 22

  2. taxtastic taxtastic Public

    Create and maintain phylogenetic "reference packages" of biological sequences.

    Python 22 13

  3. nestly nestly Public

    Make and use nested directory trees corresponding to combinatorial choices of parameters

    Python 20 1

  4. microbiome-demo microbiome-demo Public

    Demonstration files and scripts for our high-throughput sequencing analysis pipeline

    Shell 6

  5. mcl mcl Public

    Graph clustering by flow simulation

    C 6 2

  6. ampliconnoise ampliconnoise Public

    A python front end for Chris Quince's AmpliconNoise c code

    C 5

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Showing 10 of 12 repositories
  • yapp Public

    Yet another pplacer pipeline

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    fhcrc/yapp's past year of commit activity
    Python 0 0 3 2 Updated Jul 13, 2026
  • taxtastic Public

    Create and maintain phylogenetic "reference packages" of biological sequences.

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    fhcrc/taxtastic's past year of commit activity
    Python 22 GPL-3.0 13 4 0 Updated May 27, 2026
  • deenurp Public

    16S rRNA gene sequence curation and phylogenetic reference set creation

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    fhcrc/deenurp's past year of commit activity
    Python 4 GPL-3.0 3 15 1 Updated Mar 19, 2026
  • mcl Public

    Graph clustering by flow simulation

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    fhcrc/mcl's past year of commit activity
    C 6 2 0 0 Updated Dec 1, 2025
  • seqmagick Public

    An imagemagick-like frontend to Biopython SeqIO

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    fhcrc/seqmagick's past year of commit activity
    Python 121 GPL-3.0 22 15 1 Updated Mar 18, 2024
  • nestly Public

    Make and use nested directory trees corresponding to combinatorial choices of parameters

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    fhcrc/nestly's past year of commit activity
    Python 20 MIT 1 5 0 Updated Apr 23, 2017
  • ampliconnoise Public

    A python front end for Chris Quince's AmpliconNoise c code

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    fhcrc/ampliconnoise's past year of commit activity
    C 5 GPL-3.0 0 1 0 Updated Jul 2, 2015
  • biopy Public

    Automatically exported from code.google.com/p/biopy

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    fhcrc/biopy's past year of commit activity
    Python 1 0 0 0 Updated Mar 14, 2015
  • prepdrm Public

    Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study

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    fhcrc/prepdrm's past year of commit activity
    C 0 GPL-3.0 0 0 0 Updated Jun 30, 2014
  • mutgen Public

    Generate mutations under a motif based mutation model

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    fhcrc/mutgen's past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Jun 19, 2014
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