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  1. flowdec flowdec Public

    TensorFlow Deconvolution for Microscopy Data

    Jupyter Notebook 94 23

  2. cytokit cytokit Public

    Microscopy Image Cytometry Toolkit

    Jupyter Notebook 118 18

  3. ketrew ketrew Public

    Keep Track of Experimental Workflows

    OCaml 78 10

  4. survivalstan survivalstan Public

    Library of Stan Models for Survival Analysis

    Jupyter Notebook 123 22

  5. prohlatype prohlatype Public

    Probabilistic HLA typing

    OCaml 35 4

  6. pageant pageant Public

    Parallel Genomic Analysis Toolkit

    14 4

Repositories

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Showing 10 of 136 repositories
  • melanoma-reanalysis Public

    Online Materials: Somatic Mutations, Neoepitope Homology and Inflammation in Melanomas Treated with CTLA-4 Blockade

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    hammerlab/melanoma-reanalysis's past year of commit activity
    4 7 0 0 Updated Mar 22, 2026
  • guacamole Public

    Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly

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    hammerlab/guacamole's past year of commit activity
    Scala 85 Apache-2.0 21 42 1 Updated Mar 22, 2026
  • SmartCount Public

    Repository for collaboration on Celldom computer vision solutions

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    hammerlab/SmartCount's past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 17 1 Updated Aug 2, 2024
  • ppx_deriving_cmdliner Public

    Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)

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    hammerlab/ppx_deriving_cmdliner's past year of commit activity
    OCaml 97 Apache-2.0 12 12 1 Updated Sep 12, 2023
  • vcf-annotate-polyphen Public

    A tool to annotate human VCF files with PolyPhen2 effect measures

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    hammerlab/vcf-annotate-polyphen's past year of commit activity
    Python 10 Apache-2.0 6 2 3 Updated Dec 26, 2022
  • flusso Public

    FCS (Flow Cytometry Standard) parser and utility

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    hammerlab/flusso's past year of commit activity
    JavaScript 2 Apache-2.0 0 3 7 Updated Dec 9, 2022
  • t-cell-relation-extraction Public

    Literature mining for T cell relations

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    hammerlab/t-cell-relation-extraction's past year of commit activity
    Jupyter Notebook 23 5 7 5 Updated Aug 5, 2022
  • cytokit Public

    Microscopy Image Cytometry Toolkit

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    hammerlab/cytokit's past year of commit activity
    Jupyter Notebook 118 Apache-2.0 18 11 (1 issue needs help) 4 Updated Jul 15, 2022
  • flowdec Public

    TensorFlow Deconvolution for Microscopy Data

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    hammerlab/flowdec's past year of commit activity
    Jupyter Notebook 94 Apache-2.0 23 9 2 Updated Apr 29, 2022
  • genspio Public

    Generate Shell Phrases In OCaml

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    hammerlab/genspio's past year of commit activity
    OCaml 47 Apache-2.0 3 16 0 Updated Dec 15, 2021
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@armish @hammer @iskandr @ihodes @tavinathanson @ryan-williams @timodonnell @smondet @jburos @julia326 @eric-czech @e5c @rleonid @c1ndygao

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