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README.md

ImageJ is open source software for processing and analyzing scientific images.

	ImageJ is the original desktop application which has been in development since 1997.
	ImageJ2 is a new version of ImageJ targeting scientific multidimensional image data.

This organization is an architectural layer housing ImageJ, ImageJ2, and their core extensions.
ImageJ's repository is imagej/ImageJ. ImageJ2's primary repository is imagej/imagej2.
ImageJ2 is built on scijava and imglib. The fiji project is built on ImageJ and ImageJ2.
See also the ImageJ page and ImageJ2 page of the ImageJ wiki.

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ImageJ ImageJ Public

Public domain software for processing and analyzing scientific images

Java 799 271
imagej2 imagej2 Public

Open scientific N-dimensional image processing 🔬 🎇

Java 1.4k 348
pyimagej pyimagej Public

Use ImageJ from Python

Python 537 94
tutorials tutorials Public

ImageJ2 programming examples

Jupyter Notebook 200 116
imagej.github.io imagej.github.io Public

The ImageJ wiki

JavaScript 30 211
list-of-update-sites list-of-update-sites Public

The update sites ImageJ2 knows about automatically

Python 9 117

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Showing 10 of 84 repositories

imagej.github.io Public
The ImageJ wiki

imagej/imagej.github.io's past year of commit activity

JavaScript 30 211 61 (1 issue needs help) 5 Updated Nov 11, 2026
ij1-patcher Public
Extension points for ImageJ via runtime patching to support (limited) headless operation and ImageJ2's legacy layer

imagej/ij1-patcher's past year of commit activity

Java 5 BSD-2-Clause 7 7 0 Updated Nov 11, 2026
imagej-command-archetype Public
Maven archetype for a SciJava/ImageJ2 Command

imagej/imagej-command-archetype's past year of commit activity

Java 2 3 0 0 Updated Nov 11, 2026
example-legacy-plugin Public template
Simple Maven project for an ImageJ 1.x plugin

imagej/example-legacy-plugin's past year of commit activity

Java 35 44 2 1 Updated Nov 11, 2026
example-imagej2-command-kotlin Public template
An ImageJ2 command that mixes Kotlin and Java code

imagej/example-imagej2-command-kotlin's past year of commit activity

Kotlin 5 BSD-2-Clause 2 0 0 Updated Nov 11, 2026
example-imagej2-command Public template
Simple Maven project for an ImageJ2 command

imagej/example-imagej2-command's past year of commit activity

Java 34 18 1 0 Updated Nov 11, 2026
list-of-update-sites Public
The update sites ImageJ2 knows about automatically

imagej/list-of-update-sites's past year of commit activity

Python 9 117 1 0 Updated Nov 9, 2026
imagej-mesh Public
[DEPRECATED] use https://github.com/imglib/imglib2-mesh instead

imagej/imagej-mesh's past year of commit activity

Java 6 4 7 2 Updated Nov 7, 2026
op-finder Public
Utility for browsing, learning about and running all available Ops

imagej/op-finder's past year of commit activity

Java 1 GPL-3.0 2 3 0 Updated Nov 7, 2026
imagej-updater Public
The automatic updater for ImageJ

imagej/imagej-updater's past year of commit activity

Java 13 15 58 3 Updated Nov 7, 2026

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