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GeezerVison is showing github.com — Fiji

README.md

Fiji is a "batteries included" distribution of ImageJ for scientific image analysis.

  • This organization is an architectural layer housing Fiji and its plugins.
  • It is built on scijava, imglib, imagej, and scifio.
  • Some plugins have their own organizations: bigdataviewer, trackmate-sc, and trakem2.
  • The primary repository is fiji/fiji.
  • See also the Fiji project website and Fiji section of the ImageJ wiki.

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  1. fiji fiji Public

    A "batteries-included" distribution of ImageJ 🔋

    Shell 1k 261

  2. fiji.github.io fiji.github.io Public

    Fiji website

    HTML 37 10

  3. cookbook cookbook Public

    Plugins collated for the Fiji Cookbook

    Java 27 6

Repositories

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Showing 10 of 157 repositories
  • fiji-llm Public

    LLM chatbot integration in Fiji

    fiji/fiji-llm's past year of commit activity
    Java 27 BSD-2-Clause 3 33 0 Updated Nov 11, 2026
  • fiji-updater Public

    Keep your Fiji up-to-date

    fiji/fiji-updater's past year of commit activity
    Java 1 BSD-2-Clause 1 0 0 Updated Nov 7, 2026
  • appose-fiji-plugin Public

    A template to get started creating Fiji plugin based on appose-java.

    fiji/appose-fiji-plugin's past year of commit activity
    Java 3 2 0 0 Updated Nov 7, 2026
  • BalloonSegmentation Public
    fiji/BalloonSegmentation's past year of commit activity
    Java 2 GPL-2.0 2 0 0 Updated Nov 7, 2026
  • Arrow Public
    fiji/Arrow's past year of commit activity
    Java 0 0 0 0 Updated Nov 7, 2026
  • weave_jy2java Public

    A framework for inlining java code in an otherwise interpreted programming language running on the JVM, such as jython. See https://github.com/fiji/fiji/issues/161

    fiji/weave_jy2java's past year of commit activity
    Java 1 0 2 0 Updated Nov 7, 2026
  • Volume_Viewer Public
    fiji/Volume_Viewer's past year of commit activity
    Java 2 GPL-3.0 5 3 1 Updated Nov 7, 2026
  • Volume_Calculator Public
    fiji/Volume_Calculator's past year of commit activity
    Java 2 GPL-3.0 4 0 0 Updated Nov 7, 2026
  • Video_Editing Public
    fiji/Video_Editing's past year of commit activity
    Java 0 1 0 0 Updated Nov 7, 2026
  • VIB Public
    fiji/VIB's past year of commit activity
    Java 15 GPL-3.0 33 5 0 Updated Nov 7, 2026
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People

@mhl @acardona @joshmoore @frederikfly @miura @axtimwalde @ctrueden @tpietzsch @frauzufall @hinerm @StephanPreibisch @rasband @imagejan @tferr @tinevez @HedgehogCode @matthiasch

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