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phylogenetic analyses informed by deep mutational scanning data
HTML
15
6
software for the analysis and visualization of deep mutational scanning data
Python
34
20
draw sequence logos tailored to deep mutational scanning (DMS) data
Jupyter Notebook
12
1
Fit and plot neutralization curves
Jupyter Notebook
9
5
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Showing 10 of 154 repositories
flu-seqneut-2026
Public
Near real-time data on the human neutralizing antibody landscape to influenza virus as of the summer of 2026 to inform vaccine-strain selection
jbloomlab/flu-seqneut-2026's past year of commit activity
Python
2
MIT
0
0
0
Updated Nov 5, 2026
jbloomlab/bloomlab-coding-standards's past year of commit activity
1
0
0
0
Updated Nov 2, 2026
seqneut-pipeline
Public
Pipeline for analyzing sequencing-based neutralization assays
jbloomlab/seqneut-pipeline's past year of commit activity
Python
3
MIT
2
3
0
Updated Oct 31, 2026
tree-annotated-plot
Public
Annotate the axis of an Altair / Vega-Lite plot with a phylogenetic tree.
jbloomlab/tree-annotated-plot's past year of commit activity
Python
0
MIT
0
0
0
Updated Oct 30, 2026
jbloomlab/jbloomlab.github.io's past year of commit activity
Vue
1
0
0
0
Updated Oct 23, 2026
nextstrain-prot-titers-tree
Public
Build interactive `nextstrain` trees on protein sequences designed to display neutralization titer values
jbloomlab/nextstrain-prot-titers-tree's past year of commit activity
Python
0
MIT
2
1
0
Updated Oct 16, 2026
neutcurve
Public
Fit and plot neutralization curves
jbloomlab/neutcurve's past year of commit activity
Jupyter Notebook
9
GPL-3.0
5
0
0
Updated Oct 1, 2026
jbloomlab/flu-seqneut-2026to2027's past year of commit activity
0
0
0
0
Updated Sep 18, 2026
prot-struct-viz
Public
Configurable interactive views of protein structures
jbloomlab/prot-struct-viz's past year of commit activity
Python
0
MIT
0
0
0
Updated Sep 2, 2026
jbloomlab/gga_codon_muts_oligo_design's past year of commit activity
Python
0
MIT
1
0
0
Updated Sep 1, 2026
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