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README.md

SCIFIO (SCientific Image Format Input & Output) is a flexible, extensible framework for image I/O.

This organization is an architectural layer housing SCIFIO and its extensions.
It is built on scijava, imglib, and imagej.
The primary repository is scifio/scifio.
See also the SCIFIO project website and SCIFIO page of the ImageJ wiki.

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scifio scifio Public

SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.

Java 101 43
scifio.github.io scifio.github.io Public

SCIFIO web site

HTML 1 3
scifio-bf-compat scifio-bf-compat Public

SCIFIO (@scifio/scifio) plug-in allowing use of Bio-Formats readers.

Java 3 5
scifio-itk-bridge scifio-itk-bridge Public

Java code which pipes information between SCIFIO and ITK.

Java 3 3
scifio-cli scifio-cli Public

SCIFIO command line tools

Java 3 3
scifio-imageio scifio-imageio Public

SCIFIO ImageIO plugin for ITK

C++ 16 14

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scifio Public
SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.

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scifio/scifio's past year of commit activity

Java 101 BSD-2-Clause 43 231 4 Updated Nov 7, 2026
scifio-ome-xml Public
SCIFIO plug-in providing support for the OME data model, including readers, writers and translators for OME-XML and OME-TIFF formats.

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scifio/scifio-ome-xml's past year of commit activity

Java 2 BSD-2-Clause 3 10 1 Updated Nov 7, 2026
scifio-lifesci Public
SCIFIO plug-in providing support for proprietary life science formats (e.g. those supported by Bio-Formats).

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scifio/scifio-lifesci's past year of commit activity

Java 1 GPL-2.0 4 3 1 Updated Nov 7, 2026
scifio-labeling Public
I/O for ImgLib2 ImgLabelings

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scifio/scifio-labeling's past year of commit activity

Java 2 BSD-2-Clause 1 3 0 Updated Nov 7, 2026
scifio-jai-imageio Public
SCIFIO fork of the Java Advanced Imaging Image I/O Tools API Core

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scifio/scifio-jai-imageio's past year of commit activity

Java 2 2 1 0 Updated Nov 7, 2026
scifio-itk-bridge Public
Java code which pipes information between SCIFIO and ITK.

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scifio/scifio-itk-bridge's past year of commit activity

Java 3 3 5 0 Updated Nov 7, 2026
scifio-hdf5 Public
SCIFIO format plugins for reading and writing HDF5 data.

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scifio/scifio-hdf5's past year of commit activity

Java 0 BSD-2-Clause 4 1 1 Updated Nov 7, 2026
scifio-cli Public
SCIFIO command line tools

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scifio/scifio-cli's past year of commit activity

Java 3 BSD-2-Clause 3 1 0 Updated Nov 7, 2026
scifio-bf-compat Public
SCIFIO (@scifio/scifio) plug-in allowing use of Bio-Formats readers.

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scifio/scifio-bf-compat's past year of commit activity

Java 3 BSD-2-Clause 5 7 (1 issue needs help) 0 Updated Nov 7, 2026
scifio-tutorials Public
Tutorials for use of SCIFIO and its plugins.

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scifio/scifio-tutorials's past year of commit activity

Java 3 CC0-1.0 4 4 1 Updated Nov 7, 2026

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