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snakemake snakemake Public

This is the development home of the workflow management system Snakemake. For general information, see

Python 2.9k 680
snakemake-wrappers snakemake-wrappers Public

This is the development home of the Snakemake wrapper repository, see

Python 255 217
snakefmt snakefmt Public

The uncompromising Snakemake code formatter

Python 197 32
snakemake-github-action snakemake-github-action Public

A Github action for running a Snakemake workflow

64 14
snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

A Snakemake executor plugin for submitting jobs to a SLURM cluster

Python 56 61
snakemake-workflow-catalog snakemake-workflow-catalog Public

A statically generated catalog of available Snakemake workflows

Python 37 12

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snakemake Public
This is the development home of the workflow management system Snakemake. For general information, see

snakemake/snakemake's past year of commit activity

Python 2,898 MIT 680 996 (1 issue needs help) 140 Updated Nov 11, 2026
snakemake-hpc-teaching-material Public

snakemake/snakemake-hpc-teaching-material's past year of commit activity

TeX 0 CC-BY-SA-4.0 2 3 2 Updated Nov 11, 2026
snakemake-workflow-catalog Public
A statically generated catalog of available Snakemake workflows

snakemake/snakemake-workflow-catalog's past year of commit activity

Python 37 MIT 12 2 (1 issue needs help) 0 Updated Nov 10, 2026
snakemake-wrappers Public
This is the development home of the Snakemake wrapper repository, see

snakemake/snakemake-wrappers's past year of commit activity

Python 255 217 4 55 Updated Nov 10, 2026
snakemake-executor-plugin-aws-batch Public
A Snakemake executor plugin for AWS Batch

snakemake/snakemake-executor-plugin-aws-batch's past year of commit activity

Python 12 MIT 14 6 3 Updated Nov 7, 2026
snakemake-software-deployment-plugin-container Public
Run snakemake within a rootless container

snakemake/snakemake-software-deployment-plugin-container's past year of commit activity

Python 2 MIT 1 1 3 Updated Nov 6, 2026
snakemake-interface-common Public
Common functions and classes for Snakemake and its plugins

snakemake/snakemake-interface-common's past year of commit activity

Python 0 MIT 7 6 4 Updated Nov 6, 2026
snakemake-report-plugin-rocrate Public
Snakemake Report Plugin to automatically create Workflow Run RO-Crate after workflow runs holding all metadata of that workflow

snakemake/snakemake-report-plugin-rocrate's past year of commit activity

Python 3 MIT 3 2 0 Updated Nov 6, 2026
snakefmt Public
The uncompromising Snakemake code formatter

snakemake/snakefmt's past year of commit activity

Python 197 MIT 32 3 12 Updated Nov 4, 2026
snakemake-interface-software-deployment-plugins Public
A stable interface for Snakemake software deployment plugins

snakemake/snakemake-interface-software-deployment-plugins's past year of commit activity

Python 0 MIT 2 1 1 Updated Nov 3, 2026

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