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#

binning

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Here are 135 public repositories matching this topic...

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All 135 Python 46 Jupyter Notebook 36 R 11 C++ 6 JavaScript 4 MATLAB 4 Julia 3 Shell 3 Nextflow 3 C 2
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ShichenXie / scorecardpy

Star 815

Scorecard Development in python, 评分卡

python release binning credit-scoring scorecard woe woebinning
  • Updated Jul 28, 2026
  • Python

guillermo-navas-palencia / optbinning

Star 537

Optimal binning: monotonic binning with constraints. Support batch & stream optimal binning. Scorecard modelling and counterfactual explanations.

python stream optimization binning batch-processing credit-scoring scorecard streaming-data woe woebinning counterfactual-explanations mdlp
  • Updated Nov 12, 2026
  • Python

nf-core / mag

Star 328

Assembly and binning of metagenomes

workflow bioinformatics nanopore pipeline annotation nextflow assembly metagenomics binning metagenomes nanopore-sequencing nf-core long-read-sequencing
  • Updated Nov 12, 2026
  • Nextflow

PKU-EMBL / BASALT

Star 226

Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequencing data

bioinformatics deep-learning computational-biology metagenomics binning microbiome ai4science
  • Updated Sep 29, 2026
  • Python

ShichenXie / scorecard

Star 170

Scorecard Development in R, 评分卡

r release binning credit-scoring scorecard woe woebinning
  • Updated Feb 7, 2026
  • R

rhysnewell / aviary

Star 121

A hybrid assembly and MAG recovery pipeline (and more!)

workflow bioinformatics assembly metagenomics binning
  • Updated Nov 9, 2026
  • Python

oguzeroglu / Nearby

Star 106

Find nearby 3D objects in constant time O(1).

game-development octree binning 3d spatial-hash closest algortihm
  • Updated Jan 6, 2023
  • JavaScript

metagentools / GraphBin

Star 97

✨🧬 Refined binning of metagenomic contigs using assembly graphs

metagenomics binning assembly-graph label-propagation contigs
  • Updated Mar 6, 2025
  • Python

metagentools / MetaCoAG

Star 67

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

metagenomics binning contigs assembly-graphs
  • Updated Aug 28, 2026
  • Python

seqan / raptor

Star 55

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

filter bloom-filter threshold binning k-mer minimizer set-membership
  • Updated Nov 9, 2026
  • C++

KwanLab / Autometa

Star 46

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

metagenomics binning taxon-profiling
  • Updated Jan 24, 2025
  • Python

abeusher / timehash

Star 44

An algorithm for creating user configurable, variable-precision sliding windows of time. Useful for binning time values in large collections of data.

python c java hashing golang time-series perl bigdata geohash binning hashing-algorithm timehash
  • Updated Sep 9, 2026
  • C#
PandExo

natashabatalha / PandExo

Star 44

A Community Tool for Transiting Exoplanet Science with the JWST & HST

simulator astronomy exoplanets astrophysics binning hst exoplanet-transits spectroscopy jwst stsci
  • Updated Sep 14, 2026
  • Python

francescoalemanno / BayesHistogram.jl

Star 42

pure Julia package for optimal histogram binning, based on piecewise constant model.

histogram binning error-propagation
  • Updated Nov 18, 2022
  • Julia

metagentools / GraphBin2

Star 37

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

metagenomics binning contigs assembly-graphs overlapped-binning
  • Updated Oct 24, 2025
  • Python

CAMI-challenge / AMBER

Star 34

AMBER: Assessment of Metagenome BinnERs

benchmarking metagenomics binning biobox
  • Updated Jun 23, 2026
  • Python

qiyunlab / binarena

Star 33

BinaRena: Interactive Visualization and Binning of Metagenomic Contigs

visualization clustering graphics assembly metagenomics binning
  • Updated Aug 22, 2024
  • JavaScript

carstenbauer / BinningAnalysis.jl

Sponsor
Star 32

Statistical standard error estimation tools for correlated data

statistics statistical-analysis binning monte-carlo-simulation correlations
  • Updated Jul 25, 2024
  • Julia

songweizhi / Binning_refiner

Star 31

Improving genome bins through the combination of different binning programs

bioinformatics metagenomics refinement binning binning-refiner
  • Updated Jan 30, 2023
  • Python

dionhaefner / bayesian-histograms

Star 29

Bayesian histograms for estimation of binary rare event rates, with fully automated bin pruning 📊

data-mining histogram bayesian binning rare-events
  • Updated Oct 14, 2021
  • Jupyter Notebook

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