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#

gencode

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Here are 28 public repositories matching this topic...

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smallnest / gosercomp

Star 414

⚡ Golang Serializer Benchmark Comparison

golang json protobuf serializer flatbuffers thrift messagepack gogo gencode colfer
  • Updated Dec 12, 2022
  • Go

yyoshiaki / ikra

Star 29

RNAseq pipeline centered on Salmon

transcript ion illumina salmon gencode
  • Updated Nov 21, 2024
  • Shell

guigolab / LyRic

Star 24

Long RNA-seq analysis workflow

bioinformatics rnaseq transcriptomics gencode cls snakemake-workflow pacbio-iso-seq
  • Updated Oct 13, 2025
  • Python

MuhammedHasan / gencode_utr_fix

Star 17

Gencode UTR fix

genomics gencode utr
  • Updated Jan 11, 2023
  • Python

MarvinKlein1508 / CSGencodes

Star 14

A super easy tool to create gencodes and inspect links to inspect any craft in Counter Strike 2.

gencode cs2 cs2-skins
  • Updated May 12, 2026
  • C#

stevekm / reference-annotations

Star 8

Makefile for reference annotations for genes & genomic regions

bioinformatics genome makefile annotations human ensembl gencode genomic-regions reference-data reference-annotation
  • Updated Jul 25, 2022
  • Makefile

czarea / jcodes

Star 5

genernate java code with template files

yaml jdbc beetl gencode
  • Updated Mar 26, 2022
  • Java

YoannPa / Gff3ToBed

Star 4
bioinformatics genomics gff3 awk data-extraction hgnc genome-annotation bed annotation-tool gff gencode
  • Updated Feb 27, 2019
  • Shell

hisplan / cellranger-custom-ref-pkg

Star 4

Building custom reference package for Cell Ranger ATAC and ARC

gencode hg19 cellranger-atac cellranger-arc mm9
  • Updated Aug 3, 2021
  • Jupyter Notebook

mvinyard / GTFast

Star 2

Lift annotations from a GTF file to an adata object.

python genomics gtf single-cell gff gencode anndata
  • Updated May 12, 2022
  • Python

boehmv / UPF3

Star 2

Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD

bioinformatics rna-seq r deseq2 alternative-splicing salmon gencode nmd isoform-switches leafcutter
  • Updated Dec 3, 2021
  • R

johnqherman / OpenGen

Star 2

CounterStrikeSharp plugin that generates weapons, knives, gloves, and agent skins using inspect codes from CS2Inspects.

gencode cs2 weapon-skins counterstrikesharp inspect-server
  • Updated Apr 22, 2026
  • C#

rathaROG / nvidia-arch

Star 2

A lightweight tool for detecting and querying NVIDIA GPU architectures (SM/CC), and generating `-gencode` flags for CUDA builds

cuda nvidia cuda-toolkit nvidia-cuda gencode nvidia-architecture nvidia-gpu ptx ctk compile-flags cuda-compute
  • Updated Oct 16, 2026
  • Python
SMG5-SMG7

boehmv / SMG5-SMG7

Star 2

Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity

bioinformatics rna-seq r deseq2 alternative-splicing salmon gencode nmd isoform-switches leafcutter
  • Updated Jul 4, 2021
  • R

Park-Junjae / PrimeReplace-Atlas

Star 2

Transcript-unit architecture database for disease-associated large-fragment genome-writing target review.

database clinvar mane genome-editing gencode disease-genomics large-fragment-insertion transcript-architecture genome-writing
  • Updated Jul 28, 2026
  • Python

daklab / IsoformGazer

Star 2

A webtool for visualizing alternative RNA isoforms across integrated long-read RNA-seq and pseudobulked single-cell short-read RNA-seq data.

bioinformatics data-visualization alternative-splicing data-analysis rna splicing-event transcriptomics isoforms gencode single-cell-rna-seq single-cell-analysis splicing-analyses data-visualization-dashboard long-read-sequencing isoform-diversity rna-splicing-analysis short-read-sequencing
  • Updated Sep 24, 2026
  • Python

Puriney / MrY

Star 1

Management of References for Yourself

management ensembl bioinformatics-pipeline fasta gtf snakemake-workflows gencode
  • Updated Aug 14, 2019
  • Python

subhashlab / iLncRNA_repo

Star 1

iLncRNA: A Comprehensive Non-Redundant Reference Annotation of Human and Mouse Intergenic Long Non-Coding RNAs

database repository shiny-server rna shiny-apps lncrna gencode rnacentral shinyapp long-non-coding intergenic-regions lincrna genedata-extraction noncode intergenic
  • Updated Oct 9, 2026
  • Shell

ctubbs750 / snakemake-genome-bottle

Star 1

Snakemake workflow to install reference genomes and their supporting files

installer reference-genome gencode snakemake-workflow
  • Updated Apr 12, 2025
  • Python

terravic / gtex-databasee-visualize-skill

Star 0

Agent skill and CLI toolkit for querying, analyzing, and visualizing human RNA expression baselines and cis-eQTL regulatory associations from the GTEx Portal API V2 across 54 tissues into standalone interactive HTML dashboards.

python bioinformatics rna-seq genomics computational-biology gene-expression data-visualization scientific-visualization gtex transcriptomics uberon eqtl gencode cli-tool volcano-plot ai-agent interactive-dashboard tissue-specificity agent-skill human-tissues
  • Updated Oct 23, 2026
  • Python

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