A collection of unexpected challenges and learnings with nextflow and nf-core.
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Oct 5, 2026 - Shell
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A collection of unexpected challenges and learnings with nextflow and nf-core.
Working through NextFlow tutorials. See https://github.com/nextflow-io/training
docker groovy workflow pipeline nextflow groovy-language pipelines workflows dag directed-acyclic-graph nextflow-pipeline nextflow-pipelines nextflow-workflow nextflow-language nextflow-process nextflow-dsl2 nextflow-lang nextflow-tutorial nextflow-tutorials nextflow-training
Nextflow wrapper for tb-profiler
Nextflow wrapper for spotyping
A template for nextflow-hub process
Nextflow wrapper for snippy
Nextflow wrapper for spades
Nextflow wrapper for fastqc
Nextflow wrapper for kvarq
Nextflow wrapper for multiqc
Nextflow wrapper for mykrobe
Nextflow wrapper for trimmomatic
Nextflow wrapper for rd-analyzer
Nextflow wrapper for prokka
Nextflow wrapper for gunzip
Nextflow wrapper for quast
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