Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

workflow bioinformatics pipeline annotation genomics nextflow cancer reproducible-research containers conda next-generation-sequencing variant-calling somatic germline whole-exome-sequencing whole-genome-sequencing pre-processing nf-core gatk4 target-panels

• Updated Nov 12, 2026
• Nextflow

Extract and decompose (fuzzy) URLs (including emails, which are conceptually a part of URLs) in texts with Area-Pattern-based modularity

url-parsing url-parser email-parsing uri-template url-validation email-extractor email-parser pre-processing url-extractor url-normalization url-normalizer

• Updated Jan 26, 2025
• TypeScript

This Repo Will contain the Preprocessing Code for 3D Medical Imaging

python crop medical-imaging registration resampling simpleitk 3d normalization medical-image-processing medical-image-analysis pre-processing ct-preprocessing 3d-preproceing 3d-padding abdomen-ct mri-preprocessing

• Updated Jul 22, 2020
• Jupyter Notebook

`$ mdsh` # a markdown shell pre-processor

shell markdown pre-processing

• Updated Oct 13, 2026
• Rust

Pre-Processing, Post-Processing, and Visualization Tailored for OpenSeesPy

visualization python simulation post-processing opensees structural-analysis pre-processing finite-element openseespy

• Updated Sep 20, 2026
• Python

Python package implementing ML feature engineering and pre-processing for polars or pandas dataframes.

python data-science machine-learning scikit-learn data-transformation transformers pandas feature-engineering pre-processing polars narwhals

• Updated Nov 10, 2026
• Python

Discover relevant information about categorical data with entity embeddings using Neural Networks (powered by Keras)

machine-learning keras embeddings neural-networks utility-library pre-processing categorical-data entity-embedding

• Updated Dec 8, 2022
• Python

A Python package for surface-wave inversion pre- and post-processing.

inversion dispersion post-processing pre-processing surface-waves geopsy dinver swinvert

• Updated Apr 29, 2024
• Python

CPIP - a C/C++ preprocessor implemented in Python.

python c c-plus-plus preprocessor preprocessing pre-processor pre-processing

• Updated Sep 24, 2026
• Python

Efficiently Composable Data Augmentation on the GPU with Jax

gpu pre-processing jax

• Updated May 16, 2025
• Python

CFD pre- and post-processing python modules

python c cad chimera meshing cfd post-processing cgns pre-processing immersed-boundary-method

• Updated Nov 12, 2026
• C

A two-stage predictive machine learning engine that forecasts the on-time performance of flights for 15 different airports in the USA based on data collected in 2016 and 2017.

machine-learning data-visualization feature-selection performance-metrics feature-extraction forecasts pipelining flights airports data-cleaning smote correlation-coefficient pre-processing auc-roc-curve imbalanced-classes two-stage feature-ranking flight-delay-prediction smote-oversampler random-under-sampling

• Updated Jan 10, 2024
• Jupyter Notebook

SMOGN: a Pre-processing Approach for Imbalanced Regression - LIDTA2017

regression imbalanced-learning pre-processing

• Updated Aug 1, 2017
• R

Glare reduction is a step in Recovering glare images by Image processing method in Convolutional Neural Network (CNN).

opencv image-processing opencv2 pre-processing gamma-correction glare-reduction recovering-glare-images

• Updated Oct 27, 2025
• Python

A collection of tools for pre-processing, simulating, and post-processing vascular morphologies.

post-processing computational-fluid-dynamics pre-processing vascular

• Updated Mar 25, 2025
• Python

Pre-processing methods for mHealth and wearables data.

garmin pipeline dtw signal-processing basis empatica-e4 pre-processing empatica pre-process dtw-algorithm 0-preprocess

• Updated May 14, 2023
• Python

Problem Statement: Given the tweets from customers about various tech firms who manufacture and sell mobiles, computers, laptops, etc, the task is to identify if the tweets have a negative sentiment towards such companies or products.

nlp machine-learning twitter deep-learning sentiment-analysis hackathon cross-validation spacy neural-networks keras-tensorflow pre-processing punctuation-marks cnn-classification wordvectors sklearn-library features-extraction analytics-vidhya bert-embeddings elmo-vectors lemmetization

• Updated May 17, 2020
• Python

Web-based Workflow for Metabolomics and Proteomics Data Analysis

visualization gui bioinformatics r shiny exploratory-data-analysis statistical-analysis proteomics metabolomics mass-spectrometry shiny-apps shinydashboard pre-processing

• Updated Mar 25, 2026
• R

keras cnn lstm rnn ctc-loss pre-processing visual-geometry-group

• Updated Aug 29, 2020
• Jupyter Notebook

Omics Data Analysis Tools

workflow machine-learning bioinformatics r pipeline exploratory-data-analysis data-visualization statistical-analysis rstats bioconductor r-package user-friendly dimension-reduction pre-processing omics-data-integration

• Updated Nov 26, 2024
• R