John Huddleston huddlej

Staff scientist in @blab at Fred Hutchinson Cancer Center studying predictive models of influenza evolution.

Achievements

nextstrain/seasonal-flu nextstrain/seasonal-flu Public

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

Python 65 34
blab/flu-forecasting blab/flu-forecasting Public

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

Jupyter Notebook 12 2
blab/popcast blab/popcast Public

Long-term forecasts for pathogen populations

Python 1
nextstrain/augur nextstrain/augur Public

Pipeline components for real-time phylodynamic analysis

Python 280 139
blab/pathogen-embed blab/pathogen-embed Public

Create reduced dimension embeddings for pathogen sequences

Python 1
nextstrain/ncov nextstrain/ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 408

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