Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
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Updated
Nov 7, 2026 - Python
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Holistically-Nested Edge Detection
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
Calibrated inference of spiking from calcium ΔF/F data using deep networks
Matlab research tools to read, write and process seismic data
seismic reconstruction radon deconvolution seismic-waves seismic-processing mssa seismic-interpolation fx-filters fx-ssa fx-eigenimages
Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
image-processing microscopy super-resolution image-restoration deconvolution fluorescence-microscopy-imaging matlab-gui
Tensorflow implementation : U-net and FCN with global convolution
computer-vision tensorflow kaggle kaggle-competition classification autoencoder segmentation fcn upsampling unet semantic-segmentation fully-convolutional-networks deconvolution image-mask masking u-net global-convolution-network carvana large-kernels transpose-convolution
DICOM Image Segmentation with CNNs in Tensorflow
python tensorflow jupyter-notebook cnn medical-imaging convolutional-neural-networks image-segmentation dicom-images deconvolution deconvnet head-ct-scans
Deep Learning based cell composition analysis with Scaden.
machine-learning bioinformatics rna-seq deep-learning deconvolution single-cell-rna-seq cell-composition-analysis
Rust image deconvolution and restoration library.
Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia
erp julia modeling overlap regression eeg splines event-related-potentials deconvolution mixed-models mass-univariate-modeling
A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.
Profile purification of single-cell spatial transcriptomics data
Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
Deconvolution of widefield microscopy images and generation of point spread functions
deconvolution point-spread-function richardson-lucy widefield-microscopy born-wolf-model scaled-heavy-ball vkfft
A matlab EEG toolbox to perform overlap correction and non-linear & linear regression.
linear-regression overlap eeg eye-tracking splines event-related-potentials deconvolution rerp mass-univariate
Example of Deconvnet in PyTorch for VGG16
[MNRAS] Galaxy Image Deconvolution for Weak Gravitational Lensing with Unrolled Plug-and-Play ADMM
computer-vision deep-learning astronomy image-processing galaxy deconvolution pytorch-implementation
a fully Bayesian approach to deconvolve tumor microenvironment
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
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