Making Protein folding accessible to all!
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Nov 9, 2026 - Jupyter Notebook
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multiple-sequence-alignmentHere are 143 public repositories matching this topic...Language: All
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Generation of protein sequences and evolutionary alignments via discrete diffusion models
Algorithm for ultra-scale multiple protein sequence alignments: 3 million ABC transporters analyzed in 5 minutes and 18 GB of RAM.
bioinformatics proteomics longest-common-subsequence pfam multiple-sequence-alignment sequence-similarity guide-tree
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
visualization python bioinformatics genomics matplotlib sequence-alignment msa sequence-analysis multiple-sequence-alignment
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
simd long-reads multiple-sequence-alignment partial-order-alignment consensus-sequences banded-dp consensus-sequence alignment-graph gfa-format
A Julia package to analyze protein sequences, structures, and evolutionary information
bioinformatics biology proteins pdb protein-structure julia-language conservation mutual-information structural-bioinformatics protein-evolution pfam sifts multiple-sequence-alignment coevolution protein-sequence-analysis
A fast, feature rich multiple sequence alignment browser for the terminal.
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
machine-learning bioinformatics pytorch biological-sequences hierarchical-clustering multiple-sequence-alignment neurips-2021
Exploring Evolution-aware & free protein language models as protein function predictors
benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding
Fast and accurate protein structure prediction
Scalable long read self-correction and assembly polishing with multiple sequence alignment
assembly ngs consensus correction long self msa reads contigs long-reads multiple-sequence-alignment polishing self-correction
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.
bioinformatics mcp synthetic-biology computational-biology genbank crispr pcr plasmid molecular-biology sequence-alignment ai-agents claude primer-design sequence-analysis multiple-sequence-alignment bioinformatics-tool sanger-sequencing model-context-protocol mcp-app claude-science
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
bioinformatics genomics python-library python-bindings sequence-alignment cython-library multiple-sequence-alignment
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
visualization javascript evolution phylogenetic-trees beast phylogenetics virology mrbayes archaeopteryx paleontology phylodynamics multiple-sequence-alignment phyloxml archaeopteryx-js nextstrain auspice treetime nexus-format
🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
bioinformatics genetics sequence-alignment msa protein-domains multiple-sequence-alignment msa-viewer sequence-alignment-visualization msabrowser
Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
deep-learning transfer-learning multiple-sequence-alignment rna-secondary-structure canonical-base-pairs pseudoknot-base-pairs lone-pairs direct-coupling-analysis evolutionary-information non-canonical-base-pairs homologous-sequence spot-rna2 base-triples
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Multiple sequence alignment visualizer
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