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consensus-sequenceHere are 10 public repositories matching this topic...Language: All
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abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
simd long-reads multiple-sequence-alignment partial-order-alignment consensus-sequences banded-dp consensus-sequence alignment-graph gfa-format
Reference-based consensus creation
bioinformatics nextflow phylogenetics public-health variant-calling amplicon viral-genomics wastewater mafft ivar amplicon-sequencing pangolin measles freyja nextflow-pipeline sars-cov-2 consensus-sequence iqtree nextclade mpox
Fast and memory efficient partial order alignment with minipoa
simd banded-global-alignment minimizer partial-order-alignment consensus-sequence gfa-format multiple-sequence-alignement
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Tool for generating influenza A virus genome sequences from FASTQ data
This is a manual for viral amplicon data analysis of Nanopore long reads
A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.
mrbayes multiple-sequence-alignment phylogenetic-analysis fasttree consensus-sequence sequence-cleaner
End-to-end SARS-CoV-2 sequence analysis across California, New York, and Texas using notebook workflows.
python bioinformatics genomics jupyter-notebook usa phylogenetics fasta mutation-analysis sars-cov-2 consensus-sequence
A Python project for multiple sequence alignment (MSA) post-processing: consensus sequence calculation, PSSM/profile generation with sequence-logo visualization, plus a small Markov chain simulator.
markov-chain computational-biology biopython pssm multiple-sequence-alignment sequence-logo logomaker consensus-sequence
Portable, reproducible pipeline for Nanopore amplicon demultiplexing, reference assignment, per-clone consensus and QC. Whole-vector references and pooled colony-PCR deconvolution.
nanopore bioinformatics-pipeline protein-design demultiplexing amplicon-sequencing consensus-sequence plasmid-sequencing
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