SDK for running DeepLabCut on a live video stream
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Updated
Oct 21, 2026 - Python
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optogeneticsHere are 46 public repositories matching this topic...Language: All
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Precision current source, with optional optical feedback, for driving LEDs and laser diodes
A virtual optogenetics laboratory
python neuroscience computational-neuroscience neuron brain jupyter-widget optogenetics opsin brian2 brainweb
ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.
Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience
System for wireless optogenetic stimulation
LITOS - an easy-to-use tool for optogenetic cell stimulation
Toolkit for the Empirical Design of Stereotactic Brain Implants
Multi-unit spike analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
Modular analysis pipeline for videos of freely walking and socializing fly groups that includes keypoint tracking, behavior classification, and optogenetics-specific summary statistics and data visualization
tracking machine-learning computer-vision neuroscience data-visualization behavior-analysis optogenetics
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
signal-processing calcium-imaging probes optogenetics extracellular-recordings optogenetics-stimulation organoids multi-unit
A programmable light delivery box for optogenetics experiments.
RY's module for real-time, closed-loop interruption of brain activity --- detects theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)
Molecular and protein animation in Blender: an open-source Python pipeline that turns a brief and PDB/mmCIF or AlphaFold structures into labelled MP4/WebM science films, with literature-rate thermal motion, per-beat evidence levels and an AI-agent workflow (Claude Code + Blender MCP).
bioinformatics blender structural-biology pdb protein-structure computational-biology molecular-graphics scientific-visualization 3d-animation ai-agents optogenetics blender-python science-communication molecular-visualization alphafold geometry-nodes claude-code blender-mcp scientific-animation molecular-animation
Everything needed to produce the core results of "Feasible closed-loop stimulation for neural latent dynamics control"
Three-stage Drosophila connectome project: graph/motif explorer, in-silico optogenetics & escape SNN, virtual LFP synthesis
computational-neuroscience networkx spiking-neural-networks drosophila connectome optogenetics lif flywire
Contrast Optimized Stimulation player
Contrast Optimized Stimulation generator
genetic-algorithm neuroimaging glm fmri biomedical optogenetics sensory-stimulation stimulus-design contrast-optimization
hybrid-drive for optogenetic pharmacology and electrophysiology
Interactive 3D WebGL educational suite simulating Drosophila brain connectomics, optogenetics, and action potentials using Three.js, FastAPI, and GPT-5-mini.
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