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scijava

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Here are 10 public repositories matching this topic...

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All 10 Java 7 Python 2 Jupyter Notebook 1

morphonets / SNT

Star 64

The framework for quantification of neuronal anatomy

imagej imagej2 fiji scijava neuroscience neurons neuroanatomy-toolbox janelia neuron-reconstruction
  • Updated Nov 11, 2026
  • Java

knime-ip / knip

Star 55

KNIME Image Processing Extension

processing java image integration knime analysis imagej imagej2 imglib2 fiji scijava
  • Updated Nov 25, 2025
  • Java

morphonets / pysnt

Star 7

Python wrapper for SNT, the framework for quantification of neuronal anatomy

python fiji scijava neuroscience neurons neuroanatomy-toolbox snt neuron-reconstruction pyimagej
  • Updated Nov 11, 2026
  • Python

scijava / batch-processor

Star 3

A Batch Processor for SciJava

imagej scijava image-processing batch-processor
  • Updated Nov 7, 2026
  • Java
UnequalTiffs

ekatrukha / UnequalTiffs

Star 2

making montage or combine tiff images of different sizes

java imglib2 scijava fiji-plugin tiff-images utrecht-university bigdataviewer
  • Updated Aug 22, 2025
  • Java

imagej / imagej-command-archetype

Star 2

Maven archetype for a SciJava/ImageJ2 Command

imagej scijava maven-archetype
  • Updated Nov 11, 2026
  • Java

tp81 / scijava-spot-colocalization

Star 0
ops imagej scijava colocalization
  • Updated Aug 6, 2018
  • Jupyter Notebook

imcf / jython-scijava-logging

Star 0

🐍☕📑 Jython package for using SciJava's LogService for logging.

imagej2 scijava logging jython jython-library
  • Updated Nov 14, 2024
  • Python

MaximLippeveld / single-cell-image-processing

Star 0

Scalable single cell image processing software built on the SciJava framework. Can be used as ImageJ plugin or standalone CLI.

scijava feature-extraction java-8 imagej-plugins imaging
  • Updated Feb 24, 2021
  • Java

scijava / scijava-io-http

Star 0

SciJava I/O support for HTTP

http scijava
  • Updated Nov 7, 2026
  • Java

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