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transcriptomics-dataHere are 16 public repositories matching this topic...Language: All
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Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
spatial-data-analysis single-cell-omics transcriptomics-data cell-cell-interaction cell-cell-communication
STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data
An R package providing tools for single-cell RNA-seq data analysis, enhancing existing methods with helper functions.
ggplot2 scrna-seq transcriptomics single-cell deconvolution gsea scrnaseq single-cell-genomics single-cell-rna-seq single-cell-analysis seurat scrna-seq-analysis transcriptomics-data complexheatmap pseudotime-trajectory cibersortx
Repository contains information on Gene Updater
This project focuses on predicting maternal-fetal health outcomes, specifically early detection of preeclampsia, by learning transferable representations from cfRNA and placental transcriptomic data.
machine-learning bioinformatics deep-learning graph computational-biology representation-learning transcriptomics graphsage graph-neural-networks inductive-learning gnn maternal-health transcriptomics-data heterogeneous-graphs torch-geometric preeclampsia mini-batch-training
List of online databases and resources for Mycobacterium Tuberculosis
list integration genomics curated computational-biology drug-discovery proteomics omics transcriptomics proteomics-data tuberculosis proteomics-datasets proteomics-data-integration mycobacterium-tuberculosis transcriptomics-datasets transcriptomics-data-integration transcriptomics-data genomics-data genomics-data-sets mycobacterium
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
r metagenomics rnaseq deseq2 metabolomics 16s proteus edger ldm microbiome-analysis phyloseq transcriptomics-data proteomics-data-analysis bayseq qvalue
Beginner-friendly RNA-seq exploratory workflow in R using DESeq2, including PCA, differential expression analysis, MA plot, volcano plot and heatmap visualization.
visualization bioinformatics rna-seq r genomics pca deseq2 beginner-friendly transcriptomics data-analysis-in-r transcriptomics-data
Data package for Rat liver RNA-seq data from SEQC Toxicogenomics project
🧬 RNA-seq differential expression analysis of a methanotroph across a methane-oxygen counter gradient (Beals & Puri 2024).
Reproducible single-cell RNA-seq pipeline for human endometrial organoids to identify epithelial stem cell markers and characterize cellular states.
bioinformatics r single-cell health-data precision-medicine scrnaseq seurat transcriptomics-data endometrium
This repo contains the differential expression analysis .
Data from the manuscript: RNA-Seq reveals that mitochondrial genes and long non-coding RNAs may play important roles in the bivoltine generations of the non-social Neotropical bee Tetrapedia diversipes
R scripts for preprocessing, pathway scoring, Bayesian modeling, and Cox proportional hazards analyses applied to the SCAPeSCLC dataset, integrating GeoMx Cancer Transcriptome Atlas expression and survival outcomes in ES-SCLC patients treated with chemo-immunotherapy.
bioinformatics bioinformatics-pipeline survival-analysis lung-cancer bayesian-inference transcriptomics bayesian-statistics oncology-data lung-cancer-classification spatial-transcriptomics transcriptomics-datasets transcriptomics-data-integration transcriptomics-data cancer-transcriptome-profiles lung-cancer-survivability proportional-hazards lung-cancer-data-set cancer-transcriptomics spatial-transcriptome spatial-transcriptomics-analyses
Conversion of ensembl_id to gene name and gene ontology
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