Official git repository for Biopython (originally converted from CVS)

python bioinformatics genomics protein-structure dna protein biopython phylogenetics sequence-alignment

• Updated Nov 11, 2026
• Python

Interactive network visualization in Python and Dash, powered by Cytoscape.js

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• Updated Aug 9, 2025
• Python

python Circos

visualization python phylogenetic-trees biopython matplotlib circos circos-plot

• Updated Jun 14, 2024
• Python

Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python

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• Updated Nov 9, 2026
• Python

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

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• Updated Nov 2, 2026
• Python

Unified biological sequence manipulation in Python

machine-learning biopython sequence biological-sequences

• Updated Jun 12, 2024
• Python

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

python bioinformatics biology arrow biopython samtools pyarrow rust-bio duckdb polars

• Updated Mar 10, 2025
• Rust

Comparative Genomics Toolkit 3

python data-science bioinformatics statistics genomics biology evolution signal-processing parallel markov-chain phylogenetic-trees biopython phylogenetics molecular-evolution maximum-likelihood sequence-alignment non-stationary biological-sequence-analysis pycogent

• Updated Nov 12, 2026
• Python

Biopython Jupyter Notebook tutorial to characterize a small genome

python bioinformatics genomics jupyter-notebook biopython coronavirus covid-19

• Updated Apr 8, 2020
• Jupyter Notebook

Visualise networks and trees in Python, with style.

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• Updated May 5, 2026
• Python

Pandas DataFrames for phylogenetics

python pandas biopython phylogenetics

• Updated Jun 6, 2021
• Python

Simple phylogenetic tree visualization python package for phylogenetic analysis

visualization python bioinformatics phylogenetic-trees biopython matplotlib

• Updated Sep 14, 2024
• Python

This repo contains Bioinformatics lecture notes using Biopython.

bioinformatics biopython biopython-library bioinformatics-analysis

• Updated Oct 21, 2026
• Jupyter Notebook

QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

bioinformatics biopython jupyter-notebooks plasmids

• Updated May 12, 2026
• Python

Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.

bioinformatics bioinformatics-pipeline biopython bioinformatics-analysis rosalind estudo

• Updated Oct 10, 2021
• Jupyter Notebook

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

python bioinformatics biopython python-module average-nucleotide-identity orthoani

• Updated Jul 21, 2025
• Python

PERF is an Exhaustive Repeat Finder

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• Updated Apr 22, 2021
• HTML

Predicting Future Influenza Virus Sequences with Machine Learning

python machine-learning scikit-learn dna biopython flu-prediction flu

• Updated Feb 11, 2018
• Python

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

converter synthetic-biology biopython genbank sequence-design snapgene

• Updated May 10, 2025
• Python

Easy-to-use web application for visualization and comparison of genomes in Genbank file

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• Updated May 27, 2022
• Python