A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.

science awesome dynamics motion dataset biomechanics awesome-list motion-capture computer-simulation motion-tracking bioengineering gait gait-analysis musculoskeletal-models human-motion human-motion-analysis musculoskeletal-simulations

• Updated Apr 10, 2026

A Go package for engineering organisms.

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• Updated Aug 1, 2026
• Go

Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python

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• Updated Nov 9, 2026
• Python

A universal infrastructure layer for generative biology

machine-learning bioinformatics bioengineering generative-biology

• Updated Nov 7, 2026
• Python

Computational synthetic biology: Predicting DNA edits for bioengineering

data-mining deep-learning synthetic-biology biochemistry fermentation metabolic-network bioengineering computational-synthetic-biology acetaminophen reaction-operators metabolic-engineering enzyme-function

• Updated Mar 27, 2017
• Java

Optimization framework for AI-guided protein engineering

machine-learning distributed black-box-optimization bayesian-optimization active-learning experimental-design bioengineering protein-engineering lead-optimization

• Updated Nov 5, 2026
• Python

Software for predicting translation initiation rates in bacteria

synthetic-biology rna-structure bioengineering

• Updated Sep 21, 2026
• Python

Materials to reproduce the results of our paper about 3D muscle modelling.

geometry scientific-visualization biomechanics hip muscle opensim scientific-publications joint-models bioengineering scientific-research scientific-papers muscle-model

• Updated Mar 30, 2026
• MATLAB

Portable WiFi Connected IoT ECG Monitor 📈💕

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• Updated Jan 4, 2023
• JavaScript

Scripts and models to optimize musculotendon parameters in musculoskeletal models.

matlab biomechanics muscle opensim scientific-publications bioengineering scientific-research musculoskeletal-models optimization-technique musculotendon-parameters muscle-parameters

• Updated Apr 16, 2025
• MATLAB

nanoDNA-nanoROBOT-simulation: Open-source Python project for modeling and simulating DNA-based nanorobot behavior. 🧬🤖

python open-source science machine-learning bioinformatics algorithms simulation computational-biology artificial-intelligence dna neural-networks data-analysis computational-modeling molecular-biology biomedical-engineering bioengineering nanotechnology

• Updated Mar 17, 2024
• Python

"Rio" a free and open source microfluidics controller - controls fast imaging, pressure, flow, temperature and analysis.

open-source raspberry-pi electronics controller open-hardware flow-control microscopy microfluidics pid-control open-source-hardware lab-equipment bioengineering droplets droplet-detection stroboscopic-imaging

• Updated Oct 26, 2026
• G-code

Computer-Aided Process Planner (CAPP) for Synthetic Biology Research

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• Updated Jun 1, 2021
• Jupyter Notebook

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• Updated May 21, 2023
• Jupyter Notebook

Engineer biology organisms with Polymerase-go Workbench, powered by 'Poly' and super-fast 'Go' backend.

go tools analysis computational-biology synbio bioengineering polymerase

• Updated Dec 29, 2025
• TypeScript

Combined study of two biological signals: EEG Power Variability and Middle Cerebral Artery Blood Flow Velocity

signal-processing eeg filtering bioengineering ar-model

• Updated May 7, 2018
• MATLAB

CARE! PROTOTYPE! The gcode composer is a tool to plan experiments with the nydus one open source bioprinter.

3dprinting bioengineering

• Updated Apr 23, 2023
• JavaScript

An Intelligent Biomedical Semantic-Retrieval System

api engineering ai bioengineering rag agentic-ai mcp-server mcp-client

• Updated Nov 9, 2025
• Python

Procedural Plumbing for Bioengineers

bioengineering vascular vascular-networks vascularization

• Updated Mar 17, 2026
• C#

Plasmid Designer and DNA Editor

bioinformatics cross-platform genetics dna plasmid bioengineering

• Updated Mar 24, 2025
• TypeScript