Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk

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• Updated Oct 7, 2026
• HTML

Bioconductor cheat sheet

bioinformatics r howto guide cheatsheet bioconductor rnaseq compbio microarray

• Updated Aug 26, 2024
• HTML

Python library to access Gene Expression Omnibus Database (GEO)

bioinformatics rna-seq microarray rna-sequencing geo-database high-throughput-sequencing htseq

• Updated Jul 27, 2024
• Jupyter Notebook

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

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• Updated Nov 11, 2026
• Nextflow

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

bioinformatics microarray dna-methylation

• Updated Nov 1, 2026
• R

R package for normalizing RNA-seq data to make them comparable to microarray data.

package rna-seq r microarray data-processing

• Updated May 4, 2023
• R

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

machine-learning bioinformatics analysis cancer gene-expression rnaseq microarray normalization supplement

• Updated Mar 20, 2023
• HTML

Easy Copy Number !

r microarray segmentation copy-number exome-sequencing

• Updated Aug 27, 2025
• R

Cross-platform GUI desktop application for making biological heatmaps

lightweight c-plus-plus rna-seq opengl heatmap computational-biology gui-application microarray r-programming

• Updated Nov 10, 2022
• C

Microarray Analysis Pipeline in Python

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• Updated Aug 1, 2019
• Jupyter Notebook

analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)

bioinformatics microarray ncbi-geo limma

• Updated Aug 1, 2021
• Python

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

package r analysis hpc notebook dna expression microarray rna reproducibility large-scale affymetrix copy-number

• Updated Dec 14, 2025
• R

Collection of gene expression datasets

rna-seq gene-expression microarray microarray-data datasets microarray-data-analysis rna-seq-datasets transciptomics

• Updated May 9, 2026

UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images

cnn pytorch microarray image-segmentation unet unet-pytorch unet-image-segmentation unet-model unet2 microarray-image-segmentation-cnn microarray-deep-learning image-segmenation-unet

• Updated Oct 4, 2019
• Python

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

bioinformatics microarray microarray-data aml acute-myeloid-leukemia geoparse microarray-data-analysis genetic-expression-omnibus

• Updated May 27, 2021
• Python

Python port of R limma for differential expression analysis

python rna-seq microarray proteomics differential-expression limma anndata scverse

• Updated Oct 31, 2026
• Python

Genomic data manipulation tool

bam-files bioinformatics genomics genome genetics microarray wgs genome-analysis whole-genome-sequencing sam-files cram-files

• Updated Jan 27, 2026
• Python

SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data

gene genetic-algorithm feature-selection microarray simulated-annealing omics

• Updated Sep 27, 2023
• Jupyter Notebook

Latex scripts to compile my PhD thesis

rna-seq microarray splines ridge-regression multivariate-timeseries cervical-cancer gene-regulatory-network-inference

• Updated Sep 17, 2026
• TeX

Deconer: A Comprehensive and Systematic Cell Type Deconvolution Evaluator

rna-seq gene-expression microarray scrna-seq single-cell deconvolution cell-type-deconvolution

• Updated Sep 27, 2024
• R